PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca39468.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 679aa    MW: 78227.4 Da    PI: 9.1442
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca39468.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.15.6e-0857150290
        FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 f  +YA + GF+v +++++ + k  +  ++r+  C   gk+e++ +          +  ++r+ +++ tgCka ++   + d+ +++++++leHnHel 
  Dca39468.1  57 FIISYALKKGFEVFTRSNSLKpKFRNAGVSRK--C--GGKKESRYHMmerfrlackKGGRKRSGKSNVTGCKAFFEGAIQ-DDGFVIKTVHLEHNHELD 150
                 5568*********9988877633333233333..3..33333333334467898877788889999**********9999.999*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-657151IPR004330FAR1 DNA binding domain
PfamPF105516.4E-23272354IPR018289MULE transposase domain
PROSITE profilePS509668.469472508IPR007527Zinc finger, SWIM-type
SMARTSM005750.0038483510IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MVESVENSID EVVSTEESPN PIDQAVNAVE GENGTNDDIA DPTVGMVFPN CDSFAEFIIS  60
YALKKGFEVF TRSNSLKPKF RNAGVSRKCG GKKESRYHMM ERFRLACKKG GRKRSGKSNV  120
TGCKAFFEGA IQDDGFVIKT VHLEHNHELD PGNSRFKVSA RTITDYFKER IVLNDRAGIP  180
ITNNFNAMVI EAGGHENLPF NHRDLRNLVN LERRLQRING DAAALEEYFV KMKIENPNFF  240
YAIKKDNNEG RLHNVFWADA RYRAMFKVFG DVVTYDTTFL CNRYRLPFSP FIGVNHHGNS  300
ICFTAALITN EDTEMFIWVF ERWLECMGKA PPVILSDQDK AIGKAIETVF PGMSSTPRSE  360
QSNRFFKVRV SLETGLRNFM TQFDLAQQSK VEDEKTQNFI CKDRPLPYDK SVLVEEVFSK  420
LYTNEKFKEV KEQVYAGIRM FISLVMRMRS YVVYKAEEQI VQPFWKEGFR TYDVTLDKDA  480
GVFNCTCQLF EFKGILYKHI IQCMVKENIK SIPDKYILDR WRKDLIRGYE YIRVGYYNPE  540
EVESVKRAMK VKAKNAYIEK ISLHNDETYA KFEKLSDEFV KQLEDIVGIE TVRSTLDATG  600
ISKVAGKRLV QPRECNMRHI AKNTPQRLDS QLKDPVDKRG TGRGPKPKQK TTRKRAGDDI  660
PQSPLSQRSR TLSEIDLFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-45FAR1-related sequence 5